Motor neurons located at different positions in the embryonic spinal c
ord innervate distinct targets in the periphery, establishing a topogr
aphic neural map. The topographic organization of motor projections de
pends on the generation of subclasses of motor neurons that select spe
cific paths to their targets. We have cloned a family of LIM homeobox
genes in chick and show here that the combinatorial expression of four
of these genes, Islet-1, Islet-2, Lim-1, and Lim-3, defines subclasse
s of motor neurons that segregate into columns in the spinal cord and
select distinct axonal pathways. These genes are expressed prior to th
e formation of distinct motor axon pathways and before motor columns a
ppear. Our results suggest that LIM homeobox genes contribute to the g
eneration of motor neuron diversity and may confer subclasses of motor
neurons with the ability to select specific axon pathways, thereby in
itiating the topographic organization of motor projections.