A multichannel laser-induced fluorescence detector for capillary elect
rophoresis is described. The detection system combines yoctomole limit
s of detection with the simultaneous acquisition of entire fluorescenc
e emission spectra. An Ar/Kr mixed-gas ion laser provides great flexib
ility in excitation wavelengths, and a holographic grating and charge-
coupled device detector combination allows a 500-mn spectral window to
be acquired with 2-nm resolution. The limits of detection are 5 x 10(
-14) M or 80 molecules for sulforhodamine 101 and 1.5 x 10(-13) M or 2
20 molecules for fluorescein in a 50 mu m i.d. capillary, An electroph
erogram of a mixture of amino acids derivatized with both Bodipy 503/5
12 C-3 and Bodipy 576/589 C-3 demonstrates that the analytes can be di
fferentiated on the basis of both emission characteristics and migrati
on times, With the use of organic modifiers and other complex separati
on media, the spectral background increases as discrete spectral featu
res appear; the wavelength-resolved backgrounds of a variety of common
CE separation conditions are presented.