The HLA-DM locus encodes class II-like A and B chains and apparently r
egulates the antigen presentation function of conventional major histo
compatibility complex (MHC) class II molecules. Here we describe the H
LA-DMB mutations in three presentation defective B lymphoblastoid cell
s lines (B-LCL), 7.19.6, 10.6.6, and 10.78.6, which express DMB transc
ripts of abnormal length. Mutant 7.19.6 has a C --> T point mutation t
hat introduces a 5' splice site into exon 3 of DMB. The independently
derived mutants, 10.6.6 and 10.78.6, each harbor a G --> A mutation in
exon 3 and also lack an identical downstream segment of RNA. Mapping
of DMB intron/exon borders, using a genomic clone, revealed that the s
egment missing in mutants 10.6.6 and 10.78.6 represents the fourth exo
n of DMB; no mutations were found within exon 4 in either 10.6.6 or 10
.78.6, however. In addition, the DMB gene was found to have a six exon
genomic structure, typical of MHC class II B genes.