Previous studies have shown a number of different associations between
major histocompatibility complex (MHC) alleles and primary systemic v
asculitis. Disease heterogeneity and the lack of specificity of certai
n MHC typing techniques may have contributed to the lack of consistenc
y in those studies. We therefore studied a relatively homogeneous grou
p of 94 patients with Wegener's granulomatosis, microscopic polyangiit
is, or renal-limited vasculitis using molecular techniques that allow
more precise assignment of MHC genotype. DNA was prepared from periphe
ral blood and DRB1 genotype determined by Tag restriction fragment len
gth polymorphism. DQB1 and DPB1 genotype were assigned by polymerase c
hain reaction amplification followed by probing with allele-specific o
ligonucleotides. Specificity of associated anti-neutrophil cytoplasm a
ntibodies (ANCA) was determined where possible by solid phase immunoas
says using purified proteinase 3 (PR3) and myeloperoxidase (MPO). Afte
r correction for multiple comparisons there were no significant differ
ences in the distribution of DRB1, DQB1 and DPB1 alleles between a loc
al control group (N = 90 for DRB1, N = 50 for DQB1 and DPB1) and the p
atient group as a whole (N = 94) or two a priori defined subgroups (an
ti-PR3 positive, N = 35; anti-MPO positive, N = 22). We have therefore
found no significant association between primary systemic vasculitis
and any MHC class II allele. This, together with the fact that previou
s smaller studies have shown no consistent association, suggests that
any such association is very weak, if it exists at all.