Phage 029 protein p6 is one of the most abundant viral proteins in 029
-infected B subtilis cells, constituting about 4% of the total cellula
r proteins (about 3 x 10(6) copies/cell) at late infection. Electron m
icroscopic studies showed that, in vitro, protein p6 forms heterogeneo
usly-sized complexes all along 029 DNA, suggesting that protein p6 may
have a role in genome packaging and organization. The low stability o
f the protein p6-029 DNA complexes observed in vitro could reflect the
dynamic nature of these complexes, to allow replication, transcriptio
n, and encapsidation of the genome. The protein p6-DNA complex consist
s of a DNA right-handed superhelix wrapped around a multimeric protein
core. The DNA in this complex is strongly distorted and compacted. Pr
otein p6 recognition signals have been mapped near the ends of the lin
ear 029 DNA and act as nucleation sites for complex formation. Protein
p6 does not recognize a specific sequence, but sequences with specifi
c bendable properties that would favor the formation of the complex. P
rotein p6 represses transcription from the 029 C2 early promoter, and
activates initiation of 029 DNA replication that occurs from both DNA
ends. The formation of nucleoprotein complexes at the origins of repli
cation, as well as the specific positioning of protein p6 with respect
to the DNA ends are required for the activation of replication. This
suggests that the proteins involved in the initiation step of 029 DNA
replication, either directly interact with protein p6, or recognize a
conformational change at a specific location in the DNA. The mechanism
of activation could be the local and transient unpairing of DNA at sp
ecific sites, facilitated by the strong distortion of DNA conformation
in the nucleoprotein complex.