tRNA (m(5)U54)methyltransferase (RUMT) catalyzes the methylation of ur
idine 54 of transfer RNA by S-adenosyl-L-methionine. In this report, w
e present the enzymatic mechanism of RUMT, including the stereochemica
l course of the methylation reaction, and discuss RUMT-tRNA recognitio
n. As part of its enzymatic mechanism, we postulate that RUMT catalyze
s the disruption of RNA-RNA contacts. We also show that many nucleotid
e substitutions can be made in the T-loop of tRNA without affecting RU
MT binding, indicating that the recognition of the T-loop by RUMT is n
ot stringent.