The nucleotide sequence and secondary structure of two representative
variants from the Group III citrus viroids, CVd-IIIa (297 bases) and C
Vd-IIIb (294 bases) were determined. The variants are related to the a
pple scar skin viroid (ASSVd) family. Although smaller in size than an
y of the ASSVd-related viroids, the central conserved region as well a
s most of the terminal conserved region of ASSVd is retained. The rod-
like structural configuration (characteristic of ASSVd) of the variant
s as predicted by minimum free energy analysis is presented.