PENICILLIN acylase (penicillin amidohydrolase, EC3.5.1.11) is widely d
istributed among microorganisms, including bacteria, yeast and filamen
tous fungi. It is used on an industrial scale for the production of 6-
aminopenicillanic acid, the starting material for the synthesis of sem
i-synthetic penicillins. Its in vivo role remains unclear, however, an
d the observation that expression of the Escherichia coli enzyme in vi
vo is regulated by both temperature and phenylacetic acid has prompted
speculation that the enzyme could be involved in the assimilation of
aromatic compounds as carbon sources in the organism's free-living mod
e(1). The mature E. coli enzyme is a periplasmic 80K heterodimer of A
and B chains (209 and 566 amino acids, respectively(2,3)) synthesized
as a single cytoplasmic precursor containing a 26-amino-acid signal se
quence to direct export to the cytoplasm and a 54-amino-acid spacer be
tween the A and B chains which may influence the final folding of the
chains(5). The N-terminal serine of the B chain reacts with phenylmeth
ylsulphonyl fluoride, which is consistent with a catalytic role for th
e serine hydrouyl group. Modifying this serine to a cysteine(6,7) inac
tivates the enzyme, whereas threonine, arginine or glycine substitutio
n prevents ill vivo processing of the enzyme indicating that this must
be an important recognition site for cleavage. Here,ve report the cry
stal structure of penicillin acylase at 1.9 Angstrom resolution. Our a
nalysis shows that the environment of the catalytically active N-termi
nal serine of the B chain contains no adjacent histidine equivalent to
that found in the serine proteases. The nearest base to the hydroxyl
of this serine is its own alpha-amino group, which may act by a new me
chanism to endow the enzyme with its catalytic properties.