To develop a molecular basis for structure-function relationships of t
he complex milk protein system, an energy-minimized, three-dimensional
model of a casein submicelle was constructed consisting of kappa-case
in, four alpha(s1)-casein, and four beta-casein molecules. The models
for the individual caseins were from previously reported energy-minimi
zed, three-dimensional structures. Docking of one kappa-casein and fou
r alpha(s1)-casein molecules produced a framework structure through th
e interaction of two hydrophobic antiparallel sheets of kappa-casein w
ith two small hydrophobic antiparallel sheets (residue 163-174) of two
preformed alpha(s1)-casein dimers. The resulting structure is approxi
mately spherically symmetric, with a loose packing density; its extern
al portion is composed of the hydrophilic domains of the four alpha(s1
)-caseins, while the central portion contains two hydrophbic cavities
on either side of the kappa-casein central structure. Symmetric and as
ymmetric preformed dimers of beta-casein formed from the interactions
of C-terminal beta-spiral regions as a hinge point could easily be doc
ked into each of the two central cavities of the alpha-kappa framework
. This yielded two plausible energy-minimized, three-dimensional struc
tures for submicellar casein, one with two symmetric beta-casein dimer
s and one with two asymmetric dimers. These refined submicellar struct
ures are in good agreement with biochemical, chemical, and solution st
ructural information available for submicellar casein.