The proteasome or multicatalytic endopeptidase from eukaryotic cells c
onsists of at least 14 subunits that fall into two families, alpha and
beta. Subunit-specific monoclonal antibodies against ten different su
bunits of human proteasomes have been produced, together with an antib
ody that reacts with a motif (prosbox 1), common to alpha-type subunit
s. Four of the subunit-specific antibodies were able to precipitate pr
oteasomes. The subunit composition of HeLa-cell proteasomes precipitat
ed with these four different antibodies were identical, as judged from
two-dimensional electrophoresis. One of the four antibodies was used
to obtain proteasomes from cell lines (HeLa, Daudi, IMR90 and BSC-1) a
nd human tissues (placenta, kidney, and liver). Electrophoretic analys
is of these proteasomes, combined with peptide mapping of some subunit
s, suggests that they all contain 14 types of subunits as their major
constituents. However, one subunit was present in two isoelectric isof
orms in all cells examined. Two other subunits occurred in two or thre
e isoelectric isoforms in placenta, liver and kidney, but not in the c
ell cultures. Extracts of human cells (HeLa, IMR90, Daudi and erythroc
ytes) were analysed by non-denaturing electrophoresis and immunoblotti
ng. All of the 11 subunits detected by antibodies were present in a pa
ir of ATP-stabilized protein complexes, presumed to be the 26 S protei
nase, and in a doublet of complexes which migrated more slowly than pu
rified proteasomes. Besides being present in proteasomes, one subunit
was also found to occur in the free state in cell extracts.