CONFORMATIONAL EFFECTS OF SUBSTITUTING METHIONINE WITH (2S,3S)-2,3-METHANOMETHIONINE IN PHE-MET-ARG-PHE-NH2

The conformational influences of (2S,3S)-2,3-methanomethionine ((2S,3S )-cyclo-Met or (2S,3S)-cyclo-M) were studied to ascertain possible eff ects of substituting such constrained amino acids into small peptides. The peptide chosen for study was the anti-opiate Phe-Met-Arg-Phe-NH2 (FMRF-NH2 using the one-letter code). Consequently, FMRF-NH2 and F((2S ,3S)-cyclo-M)RF-NH2 were prepared, and studied by NMR in DMSO. Protons of the parent peptide had no anomalous chemical shifts, no shallow te mperature coefficients for variations of NH chemical shifts with tempe rature, and no interresidue ROE cross-peaks except for the sequential backbone signals. These results were as expected for a random coil con formation. Conversely, F((2S,3S)-cyclo-M)RF-NH2 gave NMR spectra with indications of a bias toward defined secondary structures in solution. Computer-assisted molecular simulations were carried out to visualize these conformational biases. Thus, parameters for the 2,3-methanoamin o acid were developed using literature values for bond vectors from cr ystallography, and CHARMM defaults. The validity of these parameters w as accessed from Ramachandran plots for derivatives of the type Ac-(cy clo-M)-NHMe. These parameters were then used for a comparative quenche d molecular dynamics (QMD) study of FMRF-NH2 and F((2S,3S)-cyclo-M)RF- NH2, without invoking constraints from the NMR data. Data (presented a s phi, psi dot plots) from the downloaded simulated conformations at 1 000 K, and for the energy-minimized forms of these conformations, coul d be easily rationalized on the basis of reasonable conformational bia ses about the amino acid residues. The rigidly oriented side chains of the (E)-cyclo-Met derivative (wherein The alpha-amino group and the s ide chain are trans with respect to the cyclopropane ring) had a more severe effect on the allowable psi values than on the psi torsions. Th e lowest energy structures generated in the dynamics run after minimiz ation were grouped into families to give representations of related co nformers. Finally, the results from the NMR and QMD studies were compa red. For F((2S,3S)-cyclo-M)RF-NH2 a good correlation was found, indica ting a bias toward a gamma-turn structure in solution. We predict that (E)-cyclo-Met residues in larger peptides could induce formation of t urn or 3(10)-helical structures.