Genetic exchange can take place between different strains of Trypanoso
ma brucei ssp. when they are cotransmitted via the tsetse fly vector,
but the mechanism and limits of compatibility between strains are ill-
defined as yet. Following the recovery of several hybrid genotypes wit
h single drug resistance from a cross of drug resistant parental strai
ns, we attempted a series of backcrosses and F1 crosses, selecting hyb
rids by double drug resistance. Of 4 backcrosses, one produced hybrid
progeny, the analysis of which is presented here, but none of the 4 F1
crosses produced hybrid progeny. However, among experimental flies fr
om the 8 crosses, although there were large numbers of salivary gland
infections, very few consisted of a mixture of parental clones, a prer
equisite for mating. In the successful backcross both parents were dip
loid, but none of the crosses involving triploid clones produced hybri
d progeny. The hybrid-secreting fly from the backcross contained a mix
ture of hybrid and parental clones. The hybrid clones had approximatel
y 3n DNA contents relative to the 2n parental clones and fell into 2 g
roups with respect to restriction site polymorphisms in kinetoplast DN
A maxi-circles. Fingerprinting by random PCR amplification using 8 dif
ferent arbitrary primers showed minor variation between the hybrid clo
nes.