N. Daugbjerg et al., PHYLOGENY OF THE GENUS PYRAMIMONAS (PRASINOPHYCEAE, CHLOROPHYTA) INFERRED FROM THE RBCL GENE, Journal of phycology, 30(6), 1994, pp. 991-999
A 1089-basepair fragment (approx. 75%) of the large subunit of the chl
oroplast-encoded gene, ribulose-1,5-bisphosphate carboxylase/oxygenase
(rbcL), was sequenced from 16 species of the genus Pyramimonas Schmar
da. Electron microscopic and biochemical studies of Pyramimonas, one o
f the most morphologically diverse genera within the potential sister
groups to the chlorophyll a- and b-containing plants, suggest that thi
s genus consists of at least four separate subgenera. Using the homolo
gous sequence of rbcL from Cymbomonas tetramitiformis Schiller (Halosp
haeraceae) as an outgroup and applying the maximum likelihood method,
we show that the inferred topology is congruent with traditional delim
itations of the taxa based on observations of periplast, internal ultr
astructure, and biochemical features. A bootstrap analysis also suppor
ts division at the subgeneric level; however, the low bootstrap suppor
t associated with the deep nodes precludes resolution of these branche
s. A maximum likelihood relative rate test revealed that the rbcL gene
in these single-celled green flagellates has a heterogeneous rate of
substitution. The rbcL gene in species of the subgenus Pyramimonas has
evolved at an accelerated rate relative to that of congenerics.