Yz. Sha et al., ROLE OF NUSA IN L4-MEDIATED ATTENUATION CONTROL OF THE S10 R-PROTEIN OPERON OF ESCHERICHIA-COLI, Journal of Molecular Biology, 245(5), 1995, pp. 474-485
The transcription of the 11 gene S10 operon of Escherichia coli is aut
ogenously regulated by one of the operon's products, ribosomal protein
L4. This protein stimulates termination of transcription in vivo at a
specific site within the S10 leader. The in vivo effect can be reprod
uced in a purified transcription system but requires an additional fac
tor, NusA. Our earlier ill vitro studies showed that NusA is required
for RNA polymerase pausing at the termination site; such paused comple
xes are further stabilized by L4, which presumably accounts for L4's s
timulation of termination in vivo. Here we show that NusA is not absol
utely required for RNA polymerase to recognize the attenuation site: a
t low (5 mu M) UTP concentration, RNA polymerase pauses at the site, a
lthough the paused transcription complex formed in the absence of NusA
can be further stabilized by subsequent addition of the protein. Furt
hermore, RNA polymerase pausing at the attenuation site is not suffici
ent for the L4 effect, since L4 cannot stabilize a transcription compl
ex paused at the attenuation site in the absence of NusA. We have been
able to isolate paused complexes formed without NusA and/or L4; such
complexes are active upon re-addition of NTPs, and respond as expected
to the addition of L4 or NusA. Our experiments are consistent with th
e notion that L4 is a stable component of a paused transcription compl
ex.