Cl. White et al., A SIALIC ACID-DERIVED PHOSPHONATE ANALOG INHIBITS DIFFERENT STRAINS OF INFLUENZA-VIRUS NEURAMINIDASE WITH DIFFERENT EFFICIENCIES, Journal of Molecular Biology, 245(5), 1995, pp. 623-634
A phosphonate analog of N-acetyl neuraminic acid (PANA) has been desig
ned as a potential neuraminidase (NA) inhibitor and synthesized as bot
h the alpha (ePANA) and beta (aPANA) anomers. Inhibition of type A (N2
) and type B NA activity by ePANA was approximately a 100-fold better
than by sialic acid, but inhibition of type A (N9) NA was only ten-fol
d better than by sialic acid. The aPANA compound was not a strong inhi
bitor for any of the NA strains tested. The crystal structures at 2.4
Angstrom resolution of ePANA complexed to type A (N2) NA, type A (N9)
NA and type B NA and aPANA complexed to type A (N2) NA showed that nei
ther of the PANA compounds distorted the NA active site upon binding.
No significant differences in the NA-ePANA complex structures were fou
nd to explain the anomalous inhibition of N9 neuraminidase by ePANA. W
e put forward the hypothesis that an increase in the ePANA inhibition
compared to that caused bysialic acid is due to (1) a stronger electro
static interaction between the inhibitor phosphonyl group and the acti
ve site arginine pocket and (2) a lower distortion energy requirement
for binding of ePANA.