A molecular phylogeny of the diatoms has been constructed from the nuc
leotide sequence of two domains of the nuclear-encoded large subunit r
ibosomal RNA in four centric and four pennate species. Distance and pa
rsimony analyses support the monophyly of the diatoms and their closen
ess to the chrysophytes. The Centrales (radially symmetrical) appear t
o be paraphyletic: the centric Lithodesmium undulatum Ehrenberg (Litho
desmiales, Lithodesmiaceae) is associated with the pennate lineage. In
the Pennales (bilaterally symmetrical), the araphids also appear to b
e paraphyletic. These phylogenetic inferences are in close congruence
with those previously obtained from 18S rRNA data (Bhattacharya et al.
1992; Medlin et nl. 1993). The evolutionary relationships of diatom f
amilies inferred from the ribosomal RNA data are discussed in relation
to the fossil record.