Genetic diversity of a microbial community will inevitably be affected
by environmental stress. However, our understanding of the implicatio
ns of these effects is limited. Genetic exchange between natural micro
bial communities appears to be a common phenomenon, mediated by a numb
er of microbial processes (conjugation, transformation, and transducti
on). These mechanisms of change are presumably adaptations to natural
environmental perturbation, e.g., the low levels of antibiotics produc
ed by other organisms. However, anthropogenic influences on the enviro
nment may be accelerating genetic change within microbiologic ecosyste
ms, beyond these natural adaptation rates. This article highlights som
e of the perceived risks to ecosystem health and research questions th
at need to be addressed.