Background: The core of the eukaryotic flagellum is the axoneme, a com
plex motile organelle composed of similar to 200 different polypeptide
s. The most prominent components of the axoneme are the central pair a
nd nine outer doublet microtubules. Each doublet microtubule contains
an A and a B tubule; these are composed, respectively, of 13 and 10-11
protofilaments, all of which are thought to be made of tubulin. The m
echanisms that control the assembly of the doublet microtubules and es
tablish the periodic spacings of associated proteins, such as dynein a
rms and radial spokes, are unknown. Tektins, a set of microtubule-asso
ciated proteins, are present in the axoneme as stable filaments that r
emain after the extraction of doubler microtubules; they are localized
near to where the B tubule attaches to the A tubule and near to the b
inding sites for radial spokes, inner dynein arms and nexin links. Tek
tin filaments may contribute in an interesting way to the structural p
roperties of axonemes. Results: We have fractionated doublet microtubu
les from sea urchin sperm flagella into ribbons of stable protofilamen
ts, which can be shown to originate from the A tubule. Using cryo-elec
tron microscopy, conventional electron microscopy, scanning transmissi
on electron microscopy, three-dimensional reconstruction and kinesin d
ecoration, we have found that one protofilament in the ribbon is not c
omposed of tubulin. This protofilament is an integral protofilament of
the A tubule wall, has less mass per unit length than tubulin and doe
s not bind kinesin. Conclusion: Contrary to what is generally assumed,
at least one protofilament in the wall of the A tubule is not compose
d of tubulin. Our data suggest that this non-tubulin protofilament is
primarily composed of tektins, proteins that show some structural simi
larity to intermediate filament proteins. A 480 A axial periodicity wi
thin these ribbons, revealed by scanning transmission electron microsc
opy, can be related to the structure of tektin, and may determine the
large-scale structure of the axoneme in terms of the binding of dynein
, nexin and radial spokes to the doublet microtubule.