Molten globules have been proposed to be general intermediates in prot
ein folding. Despite numerous studies, a detailed description of the s
tructure of a molten globule remains elusive. Recently, we showed that
the molten globule formed by the helical domain of alpha-lactalbumin
(alpha-LA) has a nativelike backbone topology. Here we probe local str
uctural preferences in the helical domain of the alpha-LA molten globu
le by analyzing a set of native and nonnative single disulfide bond va
riants using a combination of circular dichroism spectroscopy and dete
rmination of the equilibrium constant for disulfide bond formation. We
find that the region surrounding the 28-111 disulfide bond has a high
preference to adopt a native-like structure. Formation of other nativ
e or nonnative disulfide bonds is significantly less favorable. Our re
sults suggest that molten globules contain regions with varying degree
s of specificity for native-like structure and that the core region su
rrounding the 28-111 disulfide bond plays an important role in alpha-L
A folding by stabilizing the molten globule intermediate.