PEPTIDE MODELS .12. TOPOLOGICAL FEATURES OF MOLECULAR MECHANICS AND AB-INITIO 8D-RAMACHANDRAN MAPS - CONFORMATIONAL DATA FOR AC-(L-ALA)(4)-NHME AND FOR-(L-ALA)(4)-NH2
G. Endredi et al., PEPTIDE MODELS .12. TOPOLOGICAL FEATURES OF MOLECULAR MECHANICS AND AB-INITIO 8D-RAMACHANDRAN MAPS - CONFORMATIONAL DATA FOR AC-(L-ALA)(4)-NHME AND FOR-(L-ALA)(4)-NH2, Journal of molecular structure. Theochem, 331(1-2), 1995, pp. 11-26
Of the nine legitimate diagonal conformational minima (alpha(D) alpha(
D) alpha(D) alpha(D), alpha(L) alpha(L) alpha(L) alpha(L), beta(L) bet
a(L) beta(L) beta(L), gamma(D) gamma(D) gamma(D) gamma(D), gamma(L) ga
mma(L) gamma(L) gamma(L), delta(D) delta(D) delta(D) delta(D), delta(L
) delta(L) delta(L) delta(L), epsilon(D) epsilon(D) epsilon(D) epsilon
(D) and epsilon(L) epsilon(L) epsilon(L) epsilon(L)) only six conforma
tions (alpha(D) alpha(D) alpha(D) alpha(D), beta(L) beta(L) beta(L) be
ta(L), gamma(L) gamma(L) gamma(L) gamma(L), gamma(D) gamma(D) gamma(D)
gamma(D), delta(D) delta(D) delta(D) delta(D) and epsilon(D) epsilon(
D) epsilon(D) epsilon(D)) could be located by gradient optimization at
the HF/3-21G level of theory. The conformational and energetic conseq
uences of these findings are discussed in terms of relative stabilitie
s, degree of backbone twisting or foldedness, energy of polymerization
and density of conformational states.