The DNA binding and cytotoxicity of four intercalating agents, namely
bis-alkylamino (-N(CH2)(2)N(CH3)(2)) substituted anthraquinone, anthra
pyrazole and anthracene, and mono (N(CH2)(2)N(CH3)(2)) acridinone, hav
e been compared with their respective aliphatic amine N-oxides -N(CH2N
+(O-)(CH3)(2). The results show that, unlike the intercalators, the N-
oxides do not bind to DNA. Molecular modelling illustrates that the de
lta+ nature of the intercalator alkylamino side chains in the protonat
ed form allows for an attractive electrostatic interaction with phosph
ates of the DNA backbone, whereas the delta+ partial charge on the N-o
xide makes such an interaction not permissible; indeed, the electrosta
tic interaction with the DNA phosphates will be repulsive. The N-oxide
s show little or no cytotoxicity against V79 cells at concentrations e
quimolar to the IC90 (concentration that inhibits 90% of cell prolifer
ation) of the respective intercalators. However, the cytotoxicity of a
nthrapyrazole N-oxide against hypoxic V79 cells in the presence of an
activating system of S9 liver fraction was enhanced significantly. The
results indicate that N-oxides of DNA-affinic agents have potential a
s bioreductive prodrugs, since they possess low aerobic toxicity but u
nder hypoxic conditions can be metabolised to a potent cytotoxic speci
es presumed to be a DNA-binding tertiary amine.