The amino acid sequence of D-amino acid o;xidase from Rhodotorula grac
ilis was determined by automated Edman degradation of peptides generat
ed by enzymatic and chemical cleavage. The enzyme monomer contains 368
amino acid residues and its sequence is homologous to that of other k
nown D-amino acid oxidases. Six highly conserved regions appear to hav
e a specific role in binding of coenzyme FAD, in active site topology
and in peroxisomal targeting. Moreover, Rhodotorula gracilis D-amino a
cid oxidase contains a region with a cluster of basic amino acids, pro
bably exposed to solvent, which is absent in other D-amino acid oxidas
es.