Seven dicationic 2,5-diarylfurans have been synthesized, and their int
eractions with poly(dA-dT) and the duplex oligomer d(CGCCAATTCGCG)(2)
were evaluated by T-m measurements. The inhibition of topoisomerase II
isolated from Giardia lamblia, the inhibition of growth of G. lamblia
in cell culture by; these furans, and the effectiveness of these comp
ounds against Pneumocystis carinii in the immunosuppressed rat model h
ave been assessed. Strong binding affinities to poly(dA-dT) and to the
oligomer were observed for the dicationic furans, and the interaction
strength is directly correlated to the biological activity of the com
pounds. An X-ray structure for the complex of the dicationic amidine d
erivative, 2,5-bis(4-guanylphlenyl)furan (1), with the oligomer demons
trates the snug fit of these compounds with the AATT minor-groove bind
ing site and hydrogen bonds to AT base pairs at the floor of the minor
groove. The stronger DNA binding molecules are the most effective inh
ibitors of topoisomerase II and G. lamblia in cell culture, and there
is a correlation for both DNA interaction and topoisomerase II inhibit
ion with the biological activity of these componds against G. lamblia.
Compound 1 is the most effective against P. carinii, it is more activ
e and less toxic than pentamidine on intravenous administration and it
is also effective by oral dosage. The results presented here suggest
a model for the biological action of these compounds in which the dica
tion first binds in the minor groove of DNA and forms a complex that r
esults in the inhibition of the microbial topoisomerase II enzyme.