To study factors that affect in vivo ribozyme (Rz) activity, a model s
ystem has been devised in Saccharomyces cerevisiae based on the inhibi
tion of ADE1 gene expression. This gene was chosen because Rz action c
an be evaluated visually by the Red phenotype produced when the activi
ty of the gene product is inhibited. Different plasmid constructs allo
wed the expression of the Rz either in cis or in trans with respect to
ADE1. Rz-related inhibition of ADE1 expression was correlated with a
Red phenotype and a diminution of ADE1 mRNA levels only when the Rz ge
ne was linked 5' to ADE1. The presence of the expected 3' cleavage fra
gment was demonstrated using a technique combining RNA ligation and PC
R. This yeast system and detection technique are suited to the investi
gation of general factors affecting Rz-catalyzed inhibition of gene ex
pression under in vivo conditions.