The rfaD gene of Escherichia coli encodes ADP-L-glycero-D-mannoheptose
-6-epimerase an enzyme required for the biosynthesis of the lipopolysa
ccharide (LPS) precursor ADP-L-glycero-D-mannoheptose, associated with
production of the core oligosaccharide. We have identified an rfaD ho
mologue in Vibrio cholerae 01. This gene maps adjacent to the rfb regi
on encoding O-antigen biosynthesis, but is transcribed divergently. Th
e complete nucleotide sequence of rfaD and the flanking DNA has been d
etermined, and rfaD would appear to be the only gene homologous to kno
wn LPS core biosynthesis genes in this region. Comparison with the E.
coli rfaD shows many similar structural features such as the ADP-bindi
ng beta alpha beta fold at the N terminus, as well as a high degree of
homology of both the nucleotide and aminoacid sequences. Based on hom
ology, rfaD of V. cholerae may be transcribed using both sigma(70)- an
d sigma(54)-dependent promoters.