Ov. Galzitskaya et al., PROTEIN CHAIN CAN ACHIEVE THE ENERGY MINIMUM WITHOUT EXHAUSTIVE SORTING OF ALL ITS CONFORMATIONS - COMPUTER MODELING AND PHENOMENOLOGICAL THEORY, Molecular biology, 28(6), 1994, pp. 877-884
Energy minimization by a protein chain was studied by the Monte-Carlo
method using two-beta-sheet proteins as a model. It was shown that eve
n random sequences have an optimal temperature range in which the ener
gy minimum is reached without exhaustion of its conformations. This ra
nge is determined by the freezing-out temperature for the low-energy f
olds of the side chain. A phenomenological model was proposed explaini
ng the data obtained.