J. Landin et al., AB-INITIO AND SEMIEMPIRICAL CONFORMATION POTENTIALS FOR PHOSPHOLIPID HEAD GROUPS, Journal of physical chemistry, 99(13), 1995, pp. 4471-4485
The conformational potential of the dimethyl phosphate (DMP) anion and
the 2-ammonioethanol (AME) cation, which are substructures of the pho
sphoethanolamine head group of phospholipids, has been investigated at
the Hartree-Fock (HF) level using the 3-21G, 3-21G(), 6-31G*, and 6-
31+G basis set. For this purpose, both the DMP anion and the AME cati
on were considered as geminal double rotors with the two rotor groups
OCH3 in the case of DMP and OH and CH2NH3+ in the case;of AME. Extensi
ve scans (17 points including eight stationary points for DMP and 30 p
oints including seven stationary points for AME) of the conformational
energy surface were carried out by complete geometry optimizations at
the HF/3-21G and HF/3-21G() levels, respectively, and subsequent sin
gle point calculations with larger basis sets. The most stable DMP for
m has the two OCH3 groups in syn-clinal (+sc) positions (both dihedral
angles alpha(2) and alpha(3) = 75.3 degrees) while the AME cation pre
fers an anti-periplanar (ap) (alpha(4) = 173.3 degrees), syn-clinal (sc) (alpha(5) = 48.5 degrees) conformation with regard to the OH and C
H2NH3+ groups. The DMP anion is a rather flexible rotor that can under
go various flip-flop rotations (barriers 1 and 6 kcal/mol) that indica
te strong coupling between the rotor groups. The AME cation, on the ot
her hand, is conformationally not flexible, which has to do with;the f
act that the two rotor groups OH and CH2NH3+ are electronically very d
ifferent. The preferred rotational processes of the AME cation involve
inwardly or outwardly directed rotations at the CC bond (barriers of
5.1 and 9.3 kcal/mol) with the OH group kept essentially in an ap posi
tion. Calculations reveal that semiempirical methods such as PM3 are n
ot able to describe the conformational tendencies of either DMP anion
or AME cation correctly.