Simple mass balance models have been frequently used in limnology to s
tudy the retention of nutrients by lakes. However, there are difficult
ies in applying mass balance to marine systems, particularly with rega
rd to parameters involved in tidal flushing. A well defined tidal chan
nel at the entrance to Lough Hyne allows the use of adapted mass balan
ce models to study the nutrient economy, and to make inferences about
system scale productivity. Water quality gathered over four years demo
nstrated a net input to the lough for three different nutrients. There
was a net tidal input of dissolved inorganic phosphorus. Significant
inputs of dissolved inorganic nitrogen and dissolved inorganic silicon
came from freshwater sources. In two of the years a net input of diss
olved inorganic nitrogen from the sea was also detected. Scaling the n
et inputs with flushing terms in a mass balance leads to estimates of
the net system productivity. From a dissolved inorganic phosphorus bud
get, the uptake of nutrient in the lough implied a net system producti
on of 11-33 g C m(-2) yr(-1). Budgets for nitrogen suggest that a degr
ee of denitrification occurred. Dissolved inorganic silicon budgets un
derestimated the net system production determined using dissolved inor
ganic phosphorus by about 50%. An examination of chlorophyll transport
suggests that about 28% of the net system production may be exported
to the open sea as phytoplankton. Mass balance can be used as a simple
starting point for comparing different systems. This is likely to emp
hasise the importance of catchment type and size, along with tidal flu
shing scales in determining the local rates of processes such as net s
ystem metabolism.