In this study we analyzed fibroblasts derived from an MHC class II def
iciency patient (type III bare lymphocyte syndrome). Northern blot ana
lysis showed that upon induction with IFN-gamma these fibroblasts did
not express HLA class TI genes and displayed a strongly reduced level
of HLA class I gene expression when compared with fibroblasts of a hea
lthy individual. However, when analyzed by RT-polymerase chain reactio
n (PCR), residual expression could be detected for HLA-DRA, DPB, and D
OA, but not for HLA-DRB, DPA, and DQB. The lack of HLA-DRB transcripts
in the patient fibroblasts and the high degree of sequence polymorphi
sm of HLA-DRB were exploited in the further analysis of these fibrobla
sts. Thus far, at least three, and probably four, complementation grou
ps have been defined among patient-derived and experimentally-derived
MHC class II-negative cell lines. Transient heterokaryons between the
patient fibroblasts and representative B-lymphoblastoid cell lines fro
m each of the complementation groups were analyzed by RT-PCR and South
ern blotting, using HLA-DRB-specific primers and biotin-labeled sequen
ce specific oligonucleotides, respectively. These analyses showed that
the fibroblasts of this particular patient belonged to a novel comple
mentation group in MHC class II deficiency.