As an improved strategy for producing functional macromolecules by in
vitro evolutionary optimization, we propose an automated machine that
can process up to 960 samples in parallel. It consists of a 960-well P
CR machine with special sealed plastic reaction vessels and appropriat
e handling devices. We show that the heat-sealing technique does not s
ignificantly affect the activity of Taq DNA Polymerase or that of the
temperature-sensitive Q beta RNA polymerase but avoids cross-contamina
tion and evaporation of the samples. Initial experiments demonstrate t
he suitability of the apparatus to uniformly process the samples and t
o perform the thermocycling. Serial transfer of reaction products into
fresh reaction solution was used to initiate further rounds of amplif
ication as a typical experimental setup for an evolutionary biotechnol
ogy application.