Aj. Beveridge et Dl. Ollis, A THEORETICAL-STUDY OF SUBSTRATE-INDUCED ACTIVATION OF DIENELACTONE HYDROLASE, Protein engineering, 8(2), 1995, pp. 135-142
Dienelactone hydrolase (DLH), an enzyme from the beta-ketoadipate path
way, catalyses the hydrolysis of dienelactone to maleylacetate. DLH is
unusual because it is the only known naturally occurring enzyme which
contains the catalytic triad Cys...His...Asp. This triad has previous
ly been created artificially in the mutant serine proteases, thiol sub
tilisin and thiol trypsin. In both cases the mutant enzymes exhibited
activities several orders of magnitude lower than the wild type enzyme
s; the low reactivity has generally been attributed to the inability o
f these enzymes to form a catalytically active thiolate anion (Cys ...
His(+)...Asp(-)). The crystal structure of DLH suggests that the nativ
e enzyme exists predominantly in a catalytically inert configuration;
the triad cysteine is neutral and points away from the active site bin
ding cleft. However, a crystallographic analysis of C123S DLH complexe
d with an isostructural inhibitor (dienelactam) indicates that substra
te binding induces a prototropic rearrangement of the active site prio
r to catalysis which results in the formation of a highly nucleophilic
thiolate anion. We have performed ab initio SCF/MP2 calculations on a
relatively small portion of the active site of DLH to examine the det
ails of this activation process. Our calculations provide supporting e
vidence that the conformational changes observed in the crystal struct
ure due to inhibitor (or substrate) binding facilitate the formation o
f a reactive thiolate anion. In particular, substrate binding alters t
he position of Glu36; the carboxylate side chain of Glu36 is pushed to
wards C123 enabling it to abstract the thiol proton thus creating a ca
talytically active thiolate anion. The calculations also provide a pos
sible explanation for the low reactivities observed in the mutant seri
ne proteases.