The catalytic mechanism of the 20S proteasome from the archaebacterium
Thermoplasma acidophilum has been analyzed by site-directed mutagenes
is of the beta subunit and by inhibitor studies. Deletion of the amino
-terminal threonine or its mutation to alanine led to inactivation of
the enzyme. Mutation of the residue to serine led to a fully active en
zyme, which was over ten times more sensitive to the serine protease i
nhibitor 3,4-dichloroisocoumarin. In combination with the crystal stru
cture of a proteasome-inhibitor complex, the data show that the nucleo
philic attack is mediated by the amino-terminal threonine of processed
beta subunits. The conservation pattern of this residue in eukaryotic
sequences suggests that at least three of the seven eukaryotic beta-t
ype subunit branches should be proteolytically inactive.