Arterial, liver, and serum specimens were collected from 130 Alaska Na
tives who underwent forensic necropsy (mean age, 36.9 years; age range
, 9-85 years; 38 females and 92 males). Based upon the observed freque
ncies of the six common apo E genotypes, the estimates of the relative
frequencies of the corresponding alleles in the population are 0.020
+/- 0.009 for E2, 0.787 +/- 0.026 for E3 and 0.193 +/- 0.025 for E4. A
nalysis showed significant differences, by apo E genotype, in the exte
nt of total surface lesion involvement in both the right and left coro
nary arteries. In all but the abdominal aorta, the pattern of lesion i
nvolvement by genotype is consistent with a decrease in lesions for ge
notypes with the E2 allele and an increase in lesions for the genotype
s with the E4 allele, relative to the E3 homozygotes. After adjustment
for low + very low density lipoprotein cholesterol (LDL + VLDL-C), th
e differences fell below statistically significant levels. Analysis by
genotype of total serum cholesterol, high density lipoprotein cholest
erol (HDL-C) and LDL + VLDL-C showed no statistically significant diff
erences in analyte levels among genotypes. However, evidence is seen o
f a pattern in which total cholesterol and VLDL + LDL-C is less in gen
otypes with the E2 allele and greater in those with the E4 allele. We
conclude that there does appear to be an effect by apo E genotype upon
extent of atherosclerosis in the coronary arteries of Alaska Natives
and this effect is likely due to the previously reported effect of apo
E polymorphisms on serum cholesterol, particularly LDL + VLDL-C.