Prediction of the functional outcome for patients with stroke has depe
nded on the severity of impairment, location of brain injury, age, and
general medical condition. This study compared admission and discharg
e functional outcome (Functional Independence Measure, FIM) and defici
t severity (Fugl-Meyer, F-M) scores in a retrospective study of patien
ts with similar neurologic impairments: homonymous hemianopia, hemisen
sory loss, and hemiparesis. CT-verified stroke location was the indepe
ndent variable: cortical (n = 11), basal ganglia and internal capsule
(normal cortex and thalamus, n = 13), or combined (cortical, basal gan
glia, and internal capsule, n = 22). By 3 months on average after stro
ke, all groups demonstrated significantly improved motor function as m
easured by F-M scores. Patients with cortical lesions had the least CT
-imaged damage and the best outcome. Patients with combined lesions an
d more extensive brain injury had significantly higher FIM scores (p <
0.05) than patients with injury restricted to the basal ganglial inte
rnal capsule. Patients with basal ganglia/internal capsule injury were
more likely to have hypotonia, flaccid paralysis, and persistently im
paired balance and ambulation performance. While all patients had a co
mparable rehabilitation experience, these results suggest that patient
s with stroke confined to the basal ganglia and internal capsule benef
ited less from therapy. Isolated basal ganglia stroke may cause persis
tent corticothalamic-basal ganglia interactions that are dysfunctional
and impede recovery.