J. Yang et al., THE STRUCTURE OF ASCARIS HEMOGLOBIN DOMAIN-I AT 2.2 ANGSTROM RESOLUTION - MOLECULAR-FEATURES OF OXYGEN AVIDITY, Proceedings of the National Academy of Sciences of the United Statesof America, 92(10), 1995, pp. 4224-4228
The perienteric hemoglobin of the parasitic nematode Ascaris has an ex
ceptionally high affinity for oxygen. It is an octameric protein conta
ining two similar hemebinding domains per subunit, but recombinant con
structs expressing a single, monomeric heme-binding domain (domain 1;
D1) retain full oxygen avidity. We have solved the crystal structure o
f D1 at 2.2 Angstrom resolution. Analysis of the structure reveals a c
haracteristic globin fold and illuminates molecular features involved
in oxygen avidity of Ascaris perienteric hemoglobin. A strong hydrogen
bond between tyrosine at position 10 in the B helix (tyrosine-B10) an
d the distal oxygen of the ligand, combined with a weak hydrogen bond
between glutamine-E7 and the proximal oxygen, grips the ligand in the
binding pocket. A third hydrogen bond between these two amino acids ap
pears to stabilize the structure. The B helix of D1 is displaced later
ally by 2.5 Angstrom when compared with sperm whale myoglobin. This sh
ifts the tyrosine-B10 hydroxyl far enough from liganded oxygen to form
a strong hydrogen bond without steric hindrance. Changes in the F hel
ix compared with myoglobin contribute to a tilted heme that may also b
e important for oxygen affinity.