Six molecular markers were mapped to a 7.4-cM region of rice chromosom
e 11 containing the Xa21 gene, which confers resistance to the pathoge
n Xanthomonas oryzae pv oryzae. Three markers, RG103, 248 and 818, co-
segregated with Xa21 in a population of 1141 plants. Multiple copies o
f all marker loci were present within the region that was introgressed
from Oryza longistaminata into O. sativa. The marker loci were cloned
and primers were designed that defined sequence-tagged sites. Physica
l mapping of the three tightly linked central markers revealed that RG
103, the marker that hybridizes to the Xa21 gene, resides on a separat
e DNA fragment from the other two markers.