Finger millet (Eleusine coracana ssp. coracana) is an annual tetraploi
d member of a predominantly African genus. The crop is believed to hav
e been domesticated from the tetraploid E. coracana ssp. africana. Cyt
ogenetic and isozyme data paint to the allopolyploid nature of the spe
cies and molecular information has shown E. indica to be one of the ge
nomic donors. A recent isozyme study questioned the proposed phylogene
tic relationship between finger millet and its direct ancestor subspec
ies africana. An approach using random amplified polymorphic DNA (RAPD
) was employed in this study to examine genetic diversity and to evalu
ate hypotheses concerning the evolution of domesticated and wild annua
l species of Eleusine. Unlike previous molecular approaches, the RAPD
study revealed genetic diversity in the crop. The pattern of genetic v
ariation was loosely correlated to geographic distribution. The allote
traploid nature of the crop was confirmed and molecular markers that c
an possibly identify the other genomic donor were proposed. Genotypes
of subspecies africana did not group closely with those of the crop bu
t showed higher affinities to E. indica, reflecting the pattern of sim
ilarity revealed by the isozyme study. The multiple origin of subspeci
es africana could explain the discrepancy between the isozyme-RAPD evi
dence and previous information. The RAPD study showed the close geneti
c affinity of E. tristachya to the E. coracana - E. indica group and u
nderscored the distinctness of E. multiflora.