In the bilaterally symmetrical vertebrate CNS, all developing axons mu
st choose between remaining on the same side of the midline or growing
across it. The mechanism underlying this axonal pathfinding is, howev
er, poorly understood. Here we demonstrate that the ventral midline fl
oor plate (FP) chemorepels two types of ipsilaterally projecting axons
, one from the alar plate and another from the basal plate in the mese
ncephalon. We further demonstrate that the FP chemoattracts contralate
rally projecting myelencephalic as well as metencephalic axons. The FP
at all axial levels displayed both chemoattractive and chemorepellent
activities, suggesting that FP chemoattraction and chemorepulsion may
be at work throughout the neuraxis. Chemotropic guidance by the FP ma
y therefore play a key role in the establishment of neuronal projectio
n laterality.