TRAMP - A SOFTWARE PACKAGE FOR GENERATING TRANSPOSON MAPS

Authors
VEKLEROV E MARTIN CH THEIL EH
Citation
E. Veklerov et al., TRAMP - A SOFTWARE PACKAGE FOR GENERATING TRANSPOSON MAPS, Computer applications in the biosciences, 11(2), 1995, pp. 173-179
Citations number
7
Categorie Soggetti
Mathematical Methods, Biology & Medicine","Computer Sciences, Special Topics","Computer Science Interdisciplinary Applications","Biology Miscellaneous
Journal title
Computer applications in the biosciences → ACNP
ISSN journal
02667061
Volume
11
Issue
2
Year of publication
1995
Pages
173 - 179
Database
ISI
SICI code
0266-7061(1995)11:2<173:T-ASPF>2.0.ZU;2-I
Abstract
TRAMP is a software package for generating transposon maps that are us ed for DNA sequencing. The package provides a variety of automated too ls that can always be overridden by the user. The central part of the package is its selection algorithm that finds the most robust map with the smallest number of inserts. TRAMP has been in daily use by the se quencing team at LBL since it was introduced in the Spring of 1994. It is applicable to any sequencing project utilizing the directed strate gy.