The distribution of the mRNAs encoding the different isoforms of the c
atalytic subunit (A subunit) of calcineurin has been investigated in r
at thymus and kidney using in situ hybridization histochemistry with s
pecific antisense oligonucleotide probes. In the thymus, the mRNAs of
the A beta isoforms were the predominant transcripts and showed very i
ntense hybridization signals in the cortical areas. The A alpha mRNAs
were expressed at low levels. A beta 2 mRNA was expressed at higher le
vels than A beta 3 mRNA, but no difference could be detected between t
he expression levels of A alpha 1 and A alpha 2. In the kidney, highes
t calcineurin A mRNA hybridization signals were found in the medulla.
Signal intensities of A alpha mRNAs were comparable to those of A beta
mRNAs. A alpha 1 mRNA level was extremely weak, and A beta 2 mRNA exp
ression was slightly higher than A beta 3 mRNA expression. A tissue-sp
ecific distribution pattern of the alternatively spliced isoforms of c
alcineurin A, as suggested by these preliminary data from thymus and k
idney, may be critical in understanding the toxic side-effects associa
ted with the use of the immunosuppressive, calcineurin-inhibiting comp
ounds cyclosporin A and FK506.