The gamma-carboxyglutamic acid (Gla) domains of the vitamin K-dependen
t blood coagulation proteins contain 10 highly conserved Gla residues
within the first 33 residues, but factor IX is unique in possessing 2
additional Gla residues at positions 36 and 40. To determine their imp
ortance, factor LX species lacking these Gla residues were isolated fr
om heterologously expressed human factor IX. Using ion-exchange chroma
tography, peptide mapping, mass spectrometry, and N-terminal sequencin
g, we have purified and identified two partially carboxylated recombin
ant factor IX species; factor IX/gamma 40E is uncarboxylated at residu
e 40 and factor IX/gamma 36,40E is uncarboxylated at both residues 36
and 40. These species were compared with the fully gamma-carboxylated
recombinant factor IX, unfractionated recombinant factor IX, and plasm
a-derived factor IX. As monitored by anti-factor IX:Ca(II)-specific an
tibodies and by the quenching of intrinsic fluorescence, all these fac
tor IX species underwent the Ca(II)-induced conformational transition
required for phospholipid membrane binding and bound equivalently to p
hospholipid vesicles composed of phosphatidylserine, phosphatidylcholi
ne, and phosphatidylethanolamine. Endothelial cell binding was also si
milar in all species, with half-maximal inhibition of the binding of I
-125-labeled plasma-derived factor IX at concentrations of 2-6 nM. Fun
ctionally, factor IX/gamma 36,40E and factor IX/gamma 40E were similar
to fully gamma-carboxylated recombinant factor IX and plasma-derived
factor IX in their coagulant activity and in their ability to particip
ate in the activation of factor X in the tenase complex both with synt
hetic phospholipid vesicles and activated platelets. However, Gla 36 a
nd Gla 40 represent part of the epitope targeted by anti-factor IX:Mg(
II)-specific antibodies because these antibodies bound factor IX prefe
rentially to factor IX/gamma 36,40E and factor IX/gamma 40E. These res
ults demonstrate that the gamma-carboxylation of glutamic acid residue
s 36 and 40 in human factor IX is not required for any function of fac
tor IX examined.