Cmw. Ho et Gr. Marshall, DBMAKER - A SET OF PROGRAMS TO GENERATE 3-DIMENSIONAL DATABASES BASEDUPON USER-SPECIFIED CRITERIA, Journal of computer-aided molecular design, 9(1), 1995, pp. 65-86
DBMAKER is a program that, in conjunction with CONCORD, generates thre
e-dimensional structural databases. Numerous user-defined parameters m
onitor content, composition, size and connectivity information, but al
low the program to generate random compounds within the scope of these
constraints. SMILES string representations are generated, and convers
ion to 3D is performed by CONCORD. This assures high-quality 3D struct
ures and portability to numerous proprietary storage formats. Methods
are described to maintain compound registration, allowing database exp
ansion as required without duplication.