The term 'yeast' is often taken as a synonym for Saccharomyces cerevis
iae, but the phylogenetic diversity of yeasts is illustrated by their
assignment to two taxonomic classes of fungi, the ascomycetes and the
basidiomycetes. Subdivision of taxa within their respective classes is
usually made from comparisons of morphological and physiological feat
ures whose genetic basis is often unknown. Application of molecular co
mparisons to questions in yeast classification offers an unprecedented
opportunity to re-evaluate current taxonomic schemes from the perspec
tive of quantitative genetic differences. This review examines the imp
act of molecular comparisons, notably rRNA/rDNA sequence divergence, o
n the current phenotypically defined classification of yeasts. Princip
al findings include: 1) budding ascomycetous yeasts are monophyletic a
nd represent a sister group to the filamentous ascomycetes, 2) fission
yeasts are ancestral to budding and filamentous ascomycetes, 3) the m
olecular phylogeny of basidiomycetous yeasts is generally congruent wi
th type of hyphal septum, presence or absence of teliospores in the se
xual state, and occurrence of cellular xylose.