To investigate the genetic background of the black populations of Colo
mbia and Jamaica, we determined HLA types of 78 Colombian and 98 Jamai
can blacks from 2 different socioeconomic groups (Jamaican #1 and Jama
ican #2) and estimated the frequencies of HLA genes and haplotypes. A
phylogenetic tree based on the HLA gene frequencies revealed that Jama
ican #1 and Jamaican #2 were distinct from each other, Jamaican #1 bei
ng closely related to the Colombian blacks and the Jamaican #2 being c
losely related to Senegalese and Zairean populations. Three-locus HLA
haplotypes of Colombian and Jamaican #1 blacks were an admixture betwe
en Africans and Caucasians or South American Indians, while Jamaican #
2 blacks were relatively homogeneous and appeared to conserve African
lineages. The major five-locus HLA haplotypes were not shared among Co
lombian, Jamaican #1 and Jamaican #2 blacks. These results indicated t
hat the black populations of Colombia and Jamaica were originated from
African blacks and admired variably with Caucasians and South America
n Indians to make genetic subpopulations in Colombia and Jamaica.