We investigated polymorphism at protein and microsatellite DNA loci in
an isolated, unmanaged and cyclic population of Soay sheep on the isl
and of Hirta, St. Kilda. Extensive molecular variation was revealed at
both protein loci (mean heterozygosity 7.78 per cent) and microsatell
ite loci (mean heterozygosity 50.93 per cent). Typically, large mammal
s possess limited protein variation and we were surprised to observe s
uch a level of protein heterozygosity, particularly considering the ge
netic history of the Hirta population. Indeed, compared to other mamma
ls, Soay sheep lie within the top 17 per cent of the distribution of a
verage protein heterozygosities. We discuss the level of protein heter
ozygosity in the context of other mammalian species, other breeds of s
heep and the genetic history of Soay sheep. Possible explanations for
a large average and interlocus variance in protein heterozygosity are
proposed. Although little data are available from other studies to com
pare with microsatellite DNA variability in this population, we discus
s the potential application of microsatellite markers to interpopulati
on and interspecific genetic studies.