Matrix metalloproteases are a family of enzymes that play critical rol
es in the physiological and pathological degradation of the extracellu
lar matrix. These enzymes may be important therapeutic targets for the
treatment of various diseases where tissue degradation is part of the
pathology, such as cancer and arthritis. Matrilysin is the smallest m
ember of this family of enzymes, all of which require zinc for catalyt
ic activity. The first X-ray crystal structures of human matrilysin ar
e presented. inhibitors of metalloproteases are often characterized by
the chemical group that interacts with the active site zinc of the pr
otein. The structures of matrilysin complexed with hydroxamate (maximu
m resolution 1.9 Angstrom), carboxylate (maximum resolution 2.4 Angstr
om), and sulfodiimine (maximum resolution 2.3 Angstrom) inhibitors are
presented here and provide detailed information about how each functi
onal group interacts with the catalytic zinc. Only the zinc-coordinati
on group is variable in this series of inhibitors. Examination of thes
e inhibitor-matrilysin complexes emphasizes the dominant role the zinc
-coordinating group plays in determining the relative potencies of the
inhibitors. The structures of these matrilysin-inhibitor complexes al
so provide a basis for comparing the catalytic mechanism of MMPs and o
ther metalloproteins,