Quantitative studies of three-dimensional (3-D) structure of microscop
ic objects have been made possible through the introduction of microsc
opic volume imaging techniques, most notably the confocal fluorescence
microscope (CFM). Although the CFM is a true volume imager, its speci
fic imaging properties give rise to distortions in the images and hamp
er subsequent quantitative analysis. Therefore, it is a prerequisite t
hat confocal images are restored prior to analysis. The distortions ca
n be divided into several categories: attenuation of areas in the imag
e due to self-absorption, bleaching effects, geometrical effects and d
istortions due to diffraction effects. Of these, absorption and diffra
ction effects are the most important. This paper describes a method ai
med at the correction of diffraction-induced distortions. All the step
s necessary in restoring confocal images are discussed, including a no
vel method to measure instrumental properties on a routine basis. To t
est the restoration procedure an image of a fluorescent planar object
was restored. The results show a considerable improvement in the z-res
olution and no ringing artefacts. The relevance of the method for imag
e analysis is demonstrated by a comparison of results of applying 3-D
texture analysis to restored and unrestored images of a synthetic obje
ct. Furthermore, the method can be successfully applied to noisy fluor
escence images of biological objects, such as interphase cell nucei.