Sex (i.e. meiosis, syngamy and nuclear fusion) first evolved in primit
ively amitochondrial eukaryotes of the kingdom Archezoa. It is argued
that meiosis is monophyletic and that it evolved before either cell or
nuclear fusion, as a means for ploidy reduction. Meiosis may have beg
un so as to correct accidental endopolyploidy and been perfected to al
low regular asexual ploidy cycles. These could have allowed early arch
ezoa to have the advantages both of large multigenomic phagotrophic ce
lls and of periodic reductions to a haploid stage to facilitate the se
lective elimination of harmful mutations. I suggest that one-step meio
ses, if they genuinely exist in protists, are all secondarily derived
from conventional two-step meiosis and are not the ancestral condition
. The origin of meiosis required changes in the coupling between DNA r
eplication and nuclear division. Consideration of these cell cycle con
trols suggests that two-step meiosis could have originated by a single
mutation that delayed sister-centromere splitting and thereby simulta
neously made it possible for meiosis II to occur in the absence of a p
receding DNA replication. The proportionality between genome size and
meiotic duration can be explained if meiotic chromosome-pairing is med
iated primarily by DNA-DNA hybridization: special synaptonemal complex
proteins were therefore not necessary for the origin of meiotic pairi
ng. The diplokaryotic state, or diplokaryosis, which is widespread in
the archezoan Microsporidia and Metamonada, may have played a key role
in the evolution of these two phyla and has significant implications
for early evolution of the eukaryotic cell cycle and recombination. Di
plokaryosis is defined as the coexistence in the same cell of two hapl
oid nuclei physically attached together and which divide equationally
so that each daughter cell receives one daughter nucleus from each par
ent. In principle nuclear fusion could have evolved in a diplokaryotic
or in uninucleate archezoan after the origin of meiosis, and before t
he origin of syngamy as part of an asexual ploidy cycle. Diplokaryosis
itself may have directly favoured the origin of nucteocytoplasmic rea
rrangements associated with encystation. Modification of the centriole
/centrosome cycle was important in these and also in the origin of mei
osis. If syngamy was the final step in the evolution of sex, not the i
nitial one as commonly assumed, it could have rapidly spread through t
he population of an asexual archezoan, with a ploidy cycle involving m
eiosis and nuclear fusion, as the result of the evolution of a gene en
coding a membrane-protein that promotes the fusion of the plasma membr
ane with that of other related cells. Such a fusogenic gene might have
spread faster by being closely linked to a highly beneficial novel ge
ne than by virtue of a general effect on recombination, and faster sti
ll if it were inserted into a transposon that could spread intragenomi
cally.