The phenology of different genotypes and the distribution of genetic v
ariation among flowering plants and their progeny were examined to ass
ess the levels of assortative mating and selection in a hybrid populat
ion of Iris. This study and a previous survey of RAPD nuclear markers
and chloroplast markers indicate that the population consists of paren
tal genotypes and recombinant hybrid genotypes that are similar to the
parental species (I. fulva and I. brevicaulis), although lacking inte
rmediate genotypes. Early in the season only I. fulva genotypes produc
ed Bowers, but as flowering in these plants decreased, the hybrid geno
types and I. brevicaulis genotypes began flowering, resulting in a 24-
d period of coincidental flowering. The genotypic distribution of seed
s produced during the period of flowering overlap contained a high fre
quency of intermediate genotypes that were not present in the adult ge
neration. The degree of effective assortative mating was examined by c
omparing the observed progeny genotypic distributions with expected di
stributions from a mixed-mating model. The model included selfing and
random outcrossing to the nearest plants that had pollen-bearing flowe
rs on the day the recipient Bower was receptive. The observed genotypi
c distribution of progeny from plants with I. brevicaulis chloroplast
DNA (cpDNA) was not significantly different from the expected distribu
tion. For I. fulva genotypes, however, there were higher than expected
frequencies in the extreme genotypic classes, although intermediate g
enotypes were absent, indicating that these plants were preferentially
mating with similar genotypes. Compared with the extreme genotypes, a
larger proportion of the intermediate seed progeny produced were abor
ted, indicating that intermediate genotypes have lower viability. On t
he basis of the observed progeny genotypes and genetic disequilibria e
stimates for the adults and the progeny, there appears to be a pattern
of effective asymmetrical mating in this population. This asymmetry i
s most likely due to pollen-style interactions that reduce the fertili
zation ability of genetically dissimilar pollen, or preferential abort
ion of genetically intermediate zygotes by I. fulva-like genotypes. Th
e lack of any apparent discrimination by I. brevicaulis-like genotypes
creates a directional exchange of nuclear genetic elements that will
have implications for introgression and the evolution of hybrid genoty
pes.