We have characterized at the molecular level the zerknullt (zen) regio
n of the Drosophila subobscura Antennapedia complex. The sequence comp
arison be tween D. subobscura and D. melanogaster shows an irregular d
istribution of the conserved and diverged regions, with the homeobox a
nd a putative activating domain completely conserved. Comparisons of t
he promoter sequence and pattern of expression of the gene during deve
lopment suggest that the regulation of zen has been conserved during e
volution. The conservation of zen expression in a subpopulation of the
polar cells indicates the existence of an important role in such cell
s. We describe a transitory segmented pattern of expression of zen in
both species, suggesting the existence of interactions with a pair rul
e gene. Some indirect clues indicate that the z2 gene might be absent
from the D. subobscura genome. A chromosome walk initiated to reach th
e proboscipedia gene of D. subobscura reveals that the distance betwee
n pb and ten is at least four times the one described for D. melanogas
ter and for D. pseudoobscura. Finally, we present cytolog ical evidenc
e showing that the ANT-C is inverted in D. subobscura as compared to D
. melanogaster.